HL_8HL2_086

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8HL2|1|A23S|G|2371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_086 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.2454

The information below is about HL_4V9F_055

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8HL2|1|A23S|C|2369
8HL2|1|A23S|U|2370
8HL2|1|A23S|G|2371
8HL2|1|A23S|G|2372
8HL2|1|A23S|G|2373
8HL2|1|A23S|G|2374
8HL2|1|A23S|C|2375
8HL2|1|A23S|G|2376
8HL2|1|A23S|G|2377

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain APTN

Transfer RNA; tRNA

Chain L10E

50S ribosomal protein L10e