HL_8HL2_088

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UACAGAACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_088 not in the Motif Atlas

Homologous match to HL_4V9F_057

Geometric discrepancy: 0.5689

The information below is about HL_4V9F_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8HL2|1|A23S|U|2426
8HL2|1|A23S|A|2427
8HL2|1|A23S|C|2428
8HL2|1|A23S|A|2429
8HL2|1|A23S|G|2430
8HL2|1|A23S|A|2431
8HL2|1|A23S|A|2432
8HL2|1|A23S|C|2433
8HL2|1|A23S|G|2434

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL5P

50S ribosomal protein L5