HL_8HL2_089

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_089 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.1743

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

8HL2|1|A23S|C|2446
8HL2|1|A23S|G|2447
8HL2|1|A23S|C|2448
8HL2|1|A23S|A|2449
8HL2|1|A23S|A|2450
8HL2|1|A23S|G|2451
8HL2|1|A23S|G|2452
8HL2|1|A23S|G|2453

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain APTN

Transfer RNA; tRNA

Chain L10E

50S ribosomal protein L10e

Chain L21E

50S ribosomal protein L21e