HL_8HL2_091

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_091 not in the Motif Atlas

Homologous match to HL_4V9F_060

Geometric discrepancy: 0.3537

The information below is about HL_4V9F_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8HL2|1|A23S|C|2499
8HL2|1|A23S|G|2500
8HL2|1|A23S|A|2501
8HL2|1|A23S|A|2502
8HL2|1|A23S|A|2503
8HL2|1|A23S|G|2504

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L18P

50S ribosomal protein L18

Chain L21E

50S ribosomal protein L21e