HL_8HL2_093

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGCUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_093 not in the Motif Atlas

Homologous match to HL_4V9F_062

Geometric discrepancy: 0.2539

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8HL2|1|A23S|A|2595
8HL2|1|A23S|G|2596
8HL2|1|A23S|C|2597
8HL2|1|A23S|U|2598
8HL2|1|A23S|C|2599
8HL2|1|A23S|A|2600
8HL2|1|A23S|C|2601
8HL2|1|A23S|A|2602
8HL2|1|A23S|U|2603

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AEFG

Elongation factor 2

Chain L10E

50S ribosomal protein L10e

Chain L40E

50S ribosomal protein L40E