HL_8HL2_094

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGCAGCUG

Length

8 nucleotides

Bulged bases

8HL2|1|A23S|G|2653

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_094 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.2471

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8HL2|1|A23S|U|2652
8HL2|1|A23S|G|2653
8HL2|1|A23S|C|2654
8HL2|1|A23S|A|2655
8HL2|1|A23S|G|2656
8HL2|1|A23S|C|2657
8HL2|1|A23S|U|2658
8HL2|1|A23S|G|2659

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AEFG

Elongation factor 2

Chain AL6P

50S ribosomal protein L6

Chain L40E

50S ribosomal protein L40E