HL_8HL2_108
3D structure
- PDB id
- 8HL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8HL2_108 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1568
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8HL2|1|APTN|A|31
8HL2|1|APTN|U|32
8HL2|1|APTN|U|33
8HL2|1|APTN|G|34
8HL2|1|APTN|A|35
8HL2|1|APTN|A|36
8HL2|1|APTN|A|37
8HL2|1|APTN|A|38
8HL2|1|APTN|U|39
Current chains
- Chain APTN
- tRNA (76-MER)
Nearby chains
- Chain A16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain A23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AEFG
- Elongation factor 2
- Chain AMRN
- mRNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
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