HL_8HL4_037

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8HL4|1|A23S|A|175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_037 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1196

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8HL4|1|A23S|G|173
8HL4|1|A23S|A|174
8HL4|1|A23S|A|175
8HL4|1|A23S|A|176
8HL4|1|A23S|C|177
8HL4|1|A23S|A|178
8HL4|1|A23S|U|179
8HL4|1|A23S|C|180

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e

Chain L15P

50S ribosomal protein L15

Chain L44E

50S ribosomal protein L44e