HL_8HL4_042

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

8HL4|1|A23S|G|372, 8HL4|1|A23S|A|373, 8HL4|1|A23S|A|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_042 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1366

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8HL4|1|A23S|G|370
8HL4|1|A23S|U|371
8HL4|1|A23S|G|372
8HL4|1|A23S|A|373
8HL4|1|A23S|A|374
8HL4|1|A23S|A|375
8HL4|1|A23S|G|376
8HL4|1|A23S|C|377
8HL4|1|A23S|C|378

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L24P

50S ribosomal protein L24

Chain L46A

Conserved protein