HL_8HL4_044

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GACACGUGC

Length

9 nucleotides

Bulged bases

8HL4|1|A23S|A|454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_044 not in the Motif Atlas

Geometric match to HL_3HHN_009

Geometric discrepancy: 0.1894

The information below is about HL_3HHN_009

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8HL4|1|A23S|G|453
8HL4|1|A23S|A|454
8HL4|1|A23S|C|455
8HL4|1|A23S|A|456
8HL4|1|A23S|C|457
8HL4|1|A23S|G|458
8HL4|1|A23S|U|459
8HL4|1|A23S|G|460
8HL4|1|A23S|C|461

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15P

50S ribosomal protein L15

Chain L44E

50S ribosomal protein L44e