HL_8HL4_052

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UGUCAG

Length

6 nucleotides

Bulged bases

8HL4|1|A23S|U|777

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_052 not in the Motif Atlas

Geometric match to HL_5HR7_005

Geometric discrepancy: 0.2868

The information below is about HL_5HR7_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.5

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

8HL4|1|A23S|U|775
8HL4|1|A23S|G|776
8HL4|1|A23S|U|777
8HL4|1|A23S|C|778
8HL4|1|A23S|A|779
8HL4|1|A23S|G|780

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L44E

50S ribosomal protein L44e