HL_8HL4_063

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_063 not in the Motif Atlas

Geometric match to HL_5TBW_031

Geometric discrepancy: 0.2077

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8HL4|1|A23S|G|1425
8HL4|1|A23S|U|1426
8HL4|1|A23S|G|1427
8HL4|1|A23S|A|1428
8HL4|1|A23S|G|1429
8HL4|1|A23S|A|1430
8HL4|1|A23S|A|1431
8HL4|1|A23S|U|1432
8HL4|1|A23S|C|1433

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L31E

50S ribosomal protein L31e

Chain L47A

50S ribosomal protein L47A