HL_8HL4_064

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

GUUCGUC

Length

7 nucleotides

Bulged bases

8HL4|1|A23S|U|1469, 8HL4|1|A23S|U|1473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_064 not in the Motif Atlas

Geometric match to HL_7A0S_033

Geometric discrepancy: 0.2283

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

8HL4|1|A23S|G|1468
8HL4|1|A23S|U|1469
8HL4|1|A23S|U|1470
8HL4|1|A23S|C|1471
8HL4|1|A23S|G|1472
8HL4|1|A23S|U|1473
8HL4|1|A23S|C|1474

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L22P

50S ribosomal protein L22

Chain L39E

50S ribosomal protein L39e