HL_8HL4_068

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_068 not in the Motif Atlas

Geometric match to HL_5MGA_001

Geometric discrepancy: 0.387

The information below is about HL_5MGA_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.5

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8HL4|1|A23S|C|1613
8HL4|1|A23S|C|1614
8HL4|1|A23S|A|1615
8HL4|1|A23S|C|1616
8HL4|1|A23S|C|1617
8HL4|1|A23S|G|1618

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L47A

50S ribosomal protein L47A