HL_8HL4_073

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UGAGAAG

Length

7 nucleotides

Bulged bases

8HL4|1|A23S|A|1789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_073 not in the Motif Atlas

Geometric match to HL_1XJR_001

Geometric discrepancy: 0.237

The information below is about HL_1XJR_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8HL4|1|A23S|U|1785
8HL4|1|A23S|G|1786
8HL4|1|A23S|A|1787
8HL4|1|A23S|G|1788
8HL4|1|A23S|A|1789
8HL4|1|A23S|A|1790
8HL4|1|A23S|G|1791

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e