HL_8HL4_077

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

UUUAAUAAAAA

Length

11 nucleotides

Bulged bases

8HL4|1|A23S|A|1924, 8HL4|1|A23S|A|1925, 8HL4|1|A23S|U|1926, 8HL4|1|A23S|A|1930

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_077 not in the Motif Atlas

Geometric match to HL_4WF9_043

Geometric discrepancy: 0.2441

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

8HL4|1|A23S|U|1921
8HL4|1|A23S|U|1922
8HL4|1|A23S|U|1923
8HL4|1|A23S|A|1924
8HL4|1|A23S|A|1925
8HL4|1|A23S|U|1926
8HL4|1|A23S|A|1927
8HL4|1|A23S|A|1928
8HL4|1|A23S|A|1929
8HL4|1|A23S|A|1930
8HL4|1|A23S|A|1931

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain APTP

PHE-PHE-PHE-PHE-PHE-PHE

Chain L37E

50S ribosomal protein L37e