HL_8HL4_099

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8HL4|1|A23S|G|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_099 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.2339

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

8HL4|1|A23S|C|2867
8HL4|1|A23S|U|2868
8HL4|1|A23S|G|2869
8HL4|1|A23S|A|2870
8HL4|1|A23S|A|2871
8HL4|1|A23S|A|2872
8HL4|1|A23S|G|2873
8HL4|1|A23S|C|2874
8HL4|1|A23S|A|2875
8HL4|1|A23S|U|2876
8HL4|1|A23S|C|2877
8HL4|1|A23S|U|2878
8HL4|1|A23S|A|2879
8HL4|1|A23S|A|2880
8HL4|1|A23S|G|2881

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL6P

50S ribosomal protein L6

Chain L13P

50S ribosomal protein L13

Chain L40E

50S ribosomal protein L40E