HL_8HSP_002

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

AGCUUGCU

Length

8 nucleotides

Bulged bases

8HSP|1|A|G|82, 8HSP|1|A|U|84, 8HSP|1|A|U|85

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HSP_002 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3208

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8HSP|1|A|A|81
8HSP|1|A|G|82
8HSP|1|A|C|83
8HSP|1|A|U|84
8HSP|1|A|U|85
8HSP|1|A|G|86
8HSP|1|A|C|87
8HSP|1|A|U|88

Current chains

Chain A

16S rRNA

Nearby chains