HL_8HSP_048

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8HSP|1|a|G|329, 8HSP|1|a|A|330, 8HSP|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HSP_048 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0859

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8HSP|1|a|G|327
8HSP|1|a|U|328
8HSP|1|a|G|329
8HSP|1|a|A|330
8HSP|1|a|C|331
8HSP|1|a|A|332
8HSP|1|a|G|333
8HSP|1|a|C|334
8HSP|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24