HL_8HSP_088

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HSP_088 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1231

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8HSP|1|a|G|2303
8HSP|1|a|G|2304
8HSP|1|a|U|2305
8HSP|1|a|C|2306
8HSP|1|a|G|2307
8HSP|1|a|G|2308
8HSP|1|a|A|2309
8HSP|1|a|C|2310
8HSP|1|a|A|2311
8HSP|1|a|U|2312
8HSP|1|a|C|2313

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5