HL_8HSP_094

3D structure

PDB id

8HSP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

8HSP|1|a|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HSP_094 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0873

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8HSP|1|a|U|2528
8HSP|1|a|G|2529
8HSP|1|a|A|2530
8HSP|1|a|A|2531
8HSP|1|a|G|2532
8HSP|1|a|U|2533
8HSP|1|a|A|2534
8HSP|1|a|G|2535

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain g

50S ribosomal protein L6