HL_8HSP_106
3D structure
- PDB id
- 8HSP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- (PSU)AGAGGCCCAG
- Length
- 11 nucleotides
- Bulged bases
- 8HSP|1|V|G|17, 8HSP|1|V|G|18, 8HSP|1|V|C|21
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8HSP_106 not in the Motif Atlas
- Homologous match to HL_5HR6_001
- Geometric discrepancy: 0.4726
- The information below is about HL_5HR6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78347.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8HSP|1|V|PSU|13
8HSP|1|V|A|14
8HSP|1|V|G|15
8HSP|1|V|A|16
8HSP|1|V|G|17
8HSP|1|V|G|18
8HSP|1|V|C|19
8HSP|1|V|C|20
8HSP|1|V|C|21
8HSP|1|V|A|22
8HSP|1|V|G|23
Current chains
- Chain V
- P-site tRNA_Glu
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
Coloring options: