HL_8HTZ_013

3D structure

PDB id

8HTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HTZ_013 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.139

The information below is about HL_2ZZN_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8HTZ|1|A|G|521
8HTZ|1|A|C|522
8HTZ|1|A|A|523
8HTZ|1|A|G|524
8HTZ|1|A|C|525
8HTZ|1|A|C|526
8HTZ|1|A|G7M|527
8HTZ|1|A|C|528

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain W

mRNA