3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
8HTZ|1|a|U|1693
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8HTZ_076 not in the Motif Atlas
Geometric match to HL_7RQB_042
Geometric discrepancy: 0.0527
The information below is about HL_7RQB_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03562.2
Basepair signature
cWW-tSW-F
Number of instances in this motif group
56

Unit IDs

8HTZ|1|a|C|1691
8HTZ|1|a|U|1692
8HTZ|1|a|U|1693
8HTZ|1|a|C|1694
8HTZ|1|a|G|1695
8HTZ|1|a|G|1696

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain c
50S ribosomal protein L2

Coloring options:


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