3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
8HTZ|1|a|A|1913, 8HTZ|1|a|C|1914, 8HTZ|1|a|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8HTZ_082 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.0471
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

8HTZ|1|a|G|1910
8HTZ|1|a|PSU|1911
8HTZ|1|a|A|1912
8HTZ|1|a|A|1913
8HTZ|1|a|C|1914
8HTZ|1|a|3TD|1915
8HTZ|1|a|A|1916
8HTZ|1|a|PSU|1917
8HTZ|1|a|A|1918
8HTZ|1|a|A|1919
8HTZ|1|a|C|1920

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain V
Transfer RNA; tRNA
Chain W
mRNA
Chain X
Transfer RNA; tRNA

Coloring options:


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