3D structure

PDB id
8HU1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.69 Å

Loop

Sequence
GUGAAAAGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8HU1_066 not in the Motif Atlas
Homologous match to HL_5J7L_165
Geometric discrepancy: 0.1122
The information below is about HL_5J7L_165
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

8HU1|1|a|G|1281
8HU1|1|a|U|1282
8HU1|1|a|G|1283
8HU1|1|a|A|1284
8HU1|1|a|A|1285
8HU1|1|a|A|1286
8HU1|1|a|A|1287
8HU1|1|a|G|1288
8HU1|1|a|C|1289

Current chains

Chain a
23S rRNA

Nearby chains

Chain m
50S ribosomal protein L17
Chain r
50S ribosomal protein L22
Chain z
50S ribosomal protein L32

Coloring options:


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