HL_8HU1_087

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases (A, C, G, U)

2268A, 2275C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HU1_087 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0826

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.7

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8HU1|1|a|C|2264
8HU1|1|a|U|2265
8HU1|1|a|A|2266
8HU1|1|a|A|2267
8HU1|1|a|A|2268
8HU1|1|a|G|2269
8HU1|1|a|A|2270
8HU1|1|a|G|2271
8HU1|1|a|U|2272
8HU1|1|a|A|2273
8HU1|1|a|A|2274
8HU1|1|a|C|2275
8HU1|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16

Chain v

50S ribosomal protein L27