HL_8HU1_088

3D structure

PDB id

8HU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and ct6A37 in classical state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HU1_088 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1108

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8HU1|1|a|G|2303
8HU1|1|a|G|2304
8HU1|1|a|U|2305
8HU1|1|a|C|2306
8HU1|1|a|G|2307
8HU1|1|a|G|2308
8HU1|1|a|A|2309
8HU1|1|a|C|2310
8HU1|1|a|A|2311
8HU1|1|a|U|2312
8HU1|1|a|C|2313

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5