HL_8I44_008

3D structure

PDB id

8I44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8I44|6|A|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I44_008 not in the Motif Atlas

Geometric match to HL_4LFB_031

Geometric discrepancy: 0.2025

The information below is about HL_4LFB_031

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

8I44|6|A|U|7
8I44|6|A|U|8
8I44|6|A|U|9
8I44|6|A|C|10
8I44|6|A|G|11
8I44|6|A|A|12

Current chains

Chain A

RNA-C-3AU-uucg

Nearby chains