HL_8I9P_024

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

8I9P|1|C1|A|1132, 8I9P|1|C1|U|1133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9P_024 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.254

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8I9P|1|C1|G|1130
8I9P|1|C1|G|1131
8I9P|1|C1|A|1132
8I9P|1|C1|U|1133
8I9P|1|C1|G|1134
8I9P|1|C1|A|1135
8I9P|1|C1|A|1136
8I9P|1|C1|C|1137

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain Le

60S ribosomal protein L32-like protein

Chain Lf

60S ribosomal protein l33-like protein