RNA 3D Hub //

8I9P Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8I9P_0011/C1/38:45No text annotation
homologous
HL_8C3A_001
NA
HL_8I9P_0021/C1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_8I9P_0031/C1/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_8I9P_0041/C1/129:134UNCG
geometric
HL_4U7U_001
HL_61337.3
HL_8I9P_0051/C1/187:194T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_8I9P_0061/C1/201:205No text annotation
homologous
HL_5TBW_006
NA
HL_8I9P_0071/C1/209:217T-loop with unstacked turn
homologous
HL_5TBW_007
NA
HL_8I9P_0081/C1/270:279No text annotation
homologous
HL_5TBW_008
NA
HL_8I9P_0091/C1/295:304No text annotation
geometric
HL_5ID6_001
HL_69752.4
HL_8I9P_0101/C1/349:354GNRA
homologous
HL_5TBW_010
NA
HL_8I9P_0111/C1/374:379No text annotation
HL_8I9P_0121/C1/455:460No text annotation
geometric
HL_5TBW_018
NA
HL_8I9P_0131/C1/533:538No text annotation
HL_8I9P_0141/C1/588:592Mini UNCG
geometric
HL_5AH5_007
HL_90436.3
HL_8I9P_0151/C1/627:636No text annotation
geometric
HL_5J7L_015
NA
HL_8I9P_0161/C1/673:681No text annotation
homologous
HL_8C3A_015
NA
HL_8I9P_0171/C1/716:721No text annotation
geometric
HL_2Y9H_003
HL_75660.7
HL_8I9P_0181/C1/744:749No text annotation
homologous
HL_5TBW_018
NA
HL_8I9P_0201/C1/939:944No text annotation
geometric
HL_7RQB_011
NA
HL_8I9P_0221/C1/1058:1065No text annotation
homologous
HL_8C3A_024
NA
HL_8I9P_0231/C1/1108:1114Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_8I9P_0241/C1/1130:1137No text annotation
geometric
HL_361D_002
NA
HL_8I9P_0261/C1/1329:1339No text annotation
homologous
HL_8C3A_029
NA
HL_8I9P_0271/C1/1385:1390GNRA
homologous
HL_8C3A_030
NA
HL_8I9P_0291/C1/3142:3147UNCG
geometric
HL_4AY2_001
HL_61337.3
HL_8I9P_0301/C1/3181:3189No text annotation
geometric
HL_5TBW_018
NA
HL_8I9P_0321/C2/47:56tRNA anticodon loop
geometric
HL_6JXM_002
HL_97725.1
HL_8I9P_0331/C2/69:89No text annotation
homologous
HL_8C3A_230
NA
HL_8I9P_0341/C2/108:114No text annotation
homologous
HL_5TBW_075
NA
HL_8I9P_0351/C2/124:129No text annotation
homologous
HL_5TBW_076
NA
HL_8I9P_0361/C2/171:175No text annotation
geometric
HL_2Y8W_001
HL_40612.1
HL_8I9P_0371/C2/196:201GNRA
geometric
HL_5TBW_059
NA

Problematic loops

#loop idProblemSequence
HL_8I9P_019No text annotation
HL_8I9P_021No text annotation
HL_8I9P_025No text annotation
HL_8I9P_028Pseudoknot geometry
HL_8I9P_031Externally structured

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8I9P_0021/C1/7:8,
1/C2/150:152		Single bulged C
geometric
IL_1DQF_001
NA
IL_8I9P_0031/C1/13:15,
1/C2/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_8I9P_0041/C1/27:28,
1/C1/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_8I9P_0051/C1/31:38,
1/C1/45:53		tSH-tHW-tHH-tHS
homologous
IL_5TBW_005
NA
IL_8I9P_0061/C1/82:89,
1/C1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_8I9P_0071/C1/123:124,
1/C1/139:144		No text annotation
homologous
IL_8C3A_007
NA
IL_8I9P_0081/C1/125:127,
1/C1/136:138		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_8I9P_0091/C1/154:155,
1/C1/252:254		Single bulged U
geometric
IL_6MWN_006
IL_97561.3
IL_8I9P_0101/C1/157:159,
1/C1/249:250		Single stack bend
homologous
IL_5TBW_009
NA
IL_8I9P_0111/C1/163:164,
1/C1/240:245		No text annotation
IL_8I9P_0121/C1/167:170,
1/C1/234:237		Double sheared
geometric
IL_4KZD_002
IL_58355.2
IL_8I9P_0131/C1/172:173,
1/C1/230:232		Single stack bend
homologous
IL_8C3A_012
NA
IL_8I9P_0651/C1/173:174,
1/C1/229:231		Single stack bend
homologous
IL_8C3A_012
NA
IL_8I9P_0141/C1/175:178,
1/C1/225:228		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8I9P_0151/C1/182:184,
1/C1/197:198		Single bulged U
homologous
IL_8C3A_013
NA
IL_8I9P_0161/C1/329:331,
1/C2/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_8I9P_0171/C1/368:371,
1/C1/382:395		No text annotation
homologous
IL_8C3A_015
NA
IL_8I9P_0181/C1/396:402,
1/C2/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_8I9P_0191/C1/420:422,
1/C1/616:618		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_8I9P_0201/C1/434:436,
1/C1/480:482		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_8I9P_0211/C1/445:447,
1/C1/467:471		C-loop
geometric
IL_7RQB_104
NA
IL_8I9P_0221/C1/448:450,
1/C1/465:466		Single bulged U
geometric
IL_5J7L_017
NA
IL_8I9P_0231/C1/507:515,
1/C1/557:564		No text annotation
homologous
IL_5TBW_019
NA
IL_8I9P_0241/C1/522:529,
1/C1/542:550		No text annotation
homologous
IL_5TBW_020
NA
IL_8I9P_0251/C1/657:659,
1/C1/771:773		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_8I9P_0261/C1/667:671,
1/C1/683:687		No text annotation
homologous
IL_5TBW_022
NA
IL_8I9P_0271/C1/712:715,
1/C1/722:726		No text annotation
homologous
IL_8C3A_025
NA
IL_8I9P_0281/C1/733:734,
1/C1/760:762		Single bulged A
geometric
IL_5TBW_024
NA
IL_8I9P_0301/C1/736:737,
1/C1/756:758		Single bulged U
homologous
IL_8C3A_027
NA
IL_8I9P_0311/C1/739:744,
1/C1/749:754		No text annotation
homologous
IL_8C3A_028
NA
IL_8I9P_0321/C1/784:786,
1/C1/919:921		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8I9P_0331/C1/786:790,
1/C1/912:919		No text annotation
IL_8I9P_0341/C1/935:937,
1/C1/946:948		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8I9P_0351/C1/950:951,
1/C1/1093:1095		No text annotation
homologous
IL_8C3A_038
NA
IL_8I9P_0361/C1/958:963,
1/C1/1083:1086		No text annotation
IL_8I9P_0371/C1/964:966,
1/C1/1081:1082		Single bulged G
homologous
IL_8C3A_040
NA
IL_8I9P_0381/C1/971:974,
1/C1/1038:1041		No text annotation
IL_8I9P_0691/C1/971:978,
1/C1/1034:1041		No text annotation
IL_8I9P_0391/C1/974:978,
1/C1/1034:1038		No text annotation
IL_8I9P_0401/C1/978:979,
1/C1/1032:1034		Minor groove platform
geometric
IL_5ML7_009
IL_34520.3
IL_8I9P_0411/C1/1049:1050,
1/C1/1071:1073		Single stack bend
geometric
IL_7A0S_054
IL_15011.2
IL_8I9P_0681/C1/1049:1053,
1/C1/1069:1073		No text annotation
IL_8I9P_0421/C1/1050:1053,
1/C1/1069:1071		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_8I9P_0431/C1/1056:1058,
1/C1/1065:1066		No text annotation
IL_8I9P_0441/C1/1102:1104,
1/C1/1118:1120		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_8I9P_0451/C1/1149:1153,
1/C1/1310:1314		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8I9P_0461/C1/1155:1162,
1/C1/1307:1308		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_8I9P_0471/C1/1162:1164,
1/C1/1306:1307		Single bulged U
homologous
IL_8C3A_053
NA
IL_8I9P_0481/C1/1169:1176,
1/C1/1296:1301		No text annotation
geometric
IL_5TBW_051
NA
IL_8I9P_0491/C1/1358:1360,
1/C1/1410:1413		No text annotation
homologous
IL_8C3A_061
NA
IL_8I9P_0501/C1/1367:1369,
1/C1/1402:1403		Single bulged A
homologous
IL_8C3A_062
NA
IL_8I9P_0511/C1/1370:1377,
1/C1/1397:1401		Kink-turn
homologous
IL_8C3A_063
NA
IL_8I9P_0521/C1/1380:1382,
1/C1/1393:1394		Single bulged A
homologous
IL_5TBW_060
NA
IL_8I9P_0531/C1/1426:1432,
1/C1/2316:2321		No text annotation
homologous
IL_8C3A_065
NA
IL_8I9P_0541/C1/3117:3119,
1/C1/3224:3226		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_8I9P_0551/C1/3129:3131,
1/C1/3155:3156		Single bulged U
geometric
IL_5J7L_017
NA
IL_8I9P_0561/C1/3132:3140,
1/C1/3149:3154		No text annotation
IL_8I9P_0571/C1/3167:3173,
1/C1/3197:3202		No text annotation
IL_8I9P_0581/C1/3175:3177,
1/C1/3193:3195		Isolated non-canonical cWW pair
homologous
IL_5TBW_127
NA
IL_8I9P_0591/C2/64:66,
1/C2/93:96		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA
IL_8I9P_0601/C2/68:69,
1/C2/89:91		Single bulged U
geometric
IL_5TBW_146
NA
IL_8I9P_0611/C2/184:185,
1/C2/211:214		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_8I9P_0621/C2/188:190,
1/C2/207:208		No text annotation
IL_8I9P_0631/C2/224:225,
1/C2/293:295		Single bulged A
geometric
IL_1CSL_002
IL_14190.2
IL_8I9P_0641/C2/226:227,
1/C2/290:292		No text annotation
geometric
IL_8ZA0_002
IL_28408.2

Problematic loops

#loop idProblemSequence
IL_8I9P_001No text annotation
IL_8I9P_029Isolated non-canonical cWW pair
IL_8I9P_066Tandem non-canonical cWW pairs
IL_8I9P_067No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8I9P_0011/C1/113:123,
1/C1/144:153,
1/C1/255:259		No text annotation
homologous
J3_8P9A_042
J3_69230.1
J3_8I9P_0021/C1/113:124,
1/C1/139:153,
1/C1/255:259		No text annotation
J3_8I9P_0031/C1/179:182,
1/C1/198:207,
1/C1/219:224		No text annotation
J3_8I9P_0041/C1/332:348,
1/C1/355:360,
1/C2/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_8I9P_0051/C1/361:368,
1/C1/395:396,
1/C2/19:20		No text annotation
geometric
J3_8C3A_048
NA
J3_8I9P_0061/C1/361:371,
1/C1/382:396,
1/C2/19:20		No text annotation
homologous
J3_8P9A_047
J3_17917.1
J3_8I9P_0071/C1/428:434,
1/C1/482:485,
1/C1/605:610		No text annotation
J3_8I9P_0081/C1/492:493,
1/C1/578:587,
1/C1/593:598		No text annotation
homologous
J3_8P9A_048
J3_86133.1
J3_8I9P_0091/C1/967:968,
1/C1/1044:1048,
1/C1/1074:1080		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_8I9P_0101/C2/44:45,
1/C2/58:64,
1/C2/96:100		No text annotation
homologous
J3_8C3A_060
NA
J4_8I9P_0011/C1/112:113,
1/C1/259:264,
1/C1/285:291,
1/C1/308:311		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8I9P_0021/C1/179:182,
1/C1/198:201,
1/C1/205:207,
1/C1/219:224		No text annotation
J5_8I9P_0011/C1/20:22,
1/C2/35:42,
1/C2/102:107,
1/C2/115:116,
1/C2/137:139		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_8I9P_0021/C1/645:650,
1/C1/780:783,
1/C1/922:926,
1/C1/1356:1358,
1/C1/1413:1419		No text annotation
J6_8I9P_0011/C1/22:27,
1/C1/58:68,
1/C1/75:79,
1/C1/106:110,
1/C1/313:323,
1/C2/32:35		No text annotation
J7_8I9P_0021/C1/930:935,
1/C1/948:949,
1/C1/1096:1099,
1/C1/1123:1128,
1/C1/1139:1143,
1/C1/1320:1321,
1/C1/1347:1352		No text annotation

Problematic loops

#loop idProblemSequence
J7_8I9P_001No text annotation

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