HL_8I9P_025

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUGGCGC

Length

9 nucleotides

Bulged bases

8I9P|1|C1|C|1178

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9P|1|C1|G|1176
8I9P|1|C1|A|1177
8I9P|1|C1|C|1178
8I9P|1|C1|U|1291
8I9P|1|C1|G|1292
8I9P|1|C1|G|1293
8I9P|1|C1|C|1294
8I9P|1|C1|G|1295
8I9P|1|C1|C|1296

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LF

60S ribosomal protein l7-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain Lf

60S ribosomal protein l33-like protein