HL_8I9R_001

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

8I9R|1|C1|A|40

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9R_001 not in the Motif Atlas

Geometric match to HL_5TBW_001

Geometric discrepancy: 0.22

The information below is about HL_5TBW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8I9R|1|C1|U|38
8I9R|1|C1|A|39
8I9R|1|C1|A|40
8I9R|1|C1|G|41
8I9R|1|C1|C|42
8I9R|1|C1|A|43
8I9R|1|C1|U|44
8I9R|1|C1|A|45

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CU

rRNA-processing protein EBP2

Chain LL

60S ribosomal protein L13