HL_8I9R_036

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG(OMU)G(OMU)G

Length

7 nucleotides

Bulged bases

8I9R|1|C1|G|2686, 8I9R|1|C1|G|2688

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9R_036 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1396

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8I9R|1|C1|C|2684
8I9R|1|C1|A|2685
8I9R|1|C1|G|2686
8I9R|1|C1|OMU|2687
8I9R|1|C1|G|2688
8I9R|1|C1|OMU|2689
8I9R|1|C1|G|2690

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LT

60S ribosomal protein l21-like protein