HL_8I9R_051

3D structure

PDB id

8I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGG

Length

5 nucleotides

Bulged bases

8I9R|1|C2|C|172, 8I9R|1|C2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9R_051 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2159

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8I9R|1|C2|C|171
8I9R|1|C2|C|172
8I9R|1|C2|U|173
8I9R|1|C2|G|174
8I9R|1|C2|G|175

Current chains

Chain C2

RNA (256-MER)

Nearby chains

Chain CB

Ribosome biogenesis protein C8F11.04