HL_8I9R_055
3D structure
- PDB id
- 8I9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUCCCGUCCGCUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9R_055 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1459
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8I9R|1|C4|A|32
8I9R|1|C4|U|33
8I9R|1|C4|C|34
8I9R|1|C4|C|35
8I9R|1|C4|C|36
8I9R|1|C4|G|37
8I9R|1|C4|U|38
8I9R|1|C4|C|39
8I9R|1|C4|C|40
8I9R|1|C4|G|41
8I9R|1|C4|C|42
8I9R|1|C4|U|43
8I9R|1|C4|C|44
8I9R|1|C4|U|45
Current chains
- Chain C4
- RNA (119-MER)
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LJ
- Putative ribosomal protein
Coloring options: