HL_8I9T_015

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_015 not in the Motif Atlas

Geometric match to HL_5J7L_015

Geometric discrepancy: 0.3059

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8I9T|1|C1|U|627
8I9T|1|C1|C|628
8I9T|1|C1|U|629
8I9T|1|C1|U|630
8I9T|1|C1|G|631
8I9T|1|C1|A|632
8I9T|1|C1|A|633
8I9T|1|C1|A|634
8I9T|1|C1|C|635
8I9T|1|C1|A|636

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cf

60S ribosome biogenesis protein Rrp14

Chain Le

60S ribosomal protein L32-like protein