HL_8I9T_018

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_018 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.2716

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8I9T|1|C1|C|716
8I9T|1|C1|U|717
8I9T|1|C1|U|718
8I9T|1|C1|C|719
8I9T|1|C1|G|720
8I9T|1|C1|G|721

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cc

Ribosomal RNA-processing protein 1

Chain LQ

Ribosomal protein L18-like protein