HL_8I9T_019

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8I9T|1|C1|A|746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_019 not in the Motif Atlas

Homologous match to HL_5TBW_018

Geometric discrepancy: 0.3237

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8I9T|1|C1|G|744
8I9T|1|C1|U|745
8I9T|1|C1|A|746
8I9T|1|C1|U|747
8I9T|1|C1|U|748
8I9T|1|C1|C|749

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CA

Brix domain-containing protein

Chain CU

rRNA-processing protein EBP2