HL_8I9T_026

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8I9T|1|C1|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_026 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3433

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8I9T|1|C1|C|1221
8I9T|1|C1|A|1222
8I9T|1|C1|U|1223
8I9T|1|C1|G|1224
8I9T|1|C1|G|1225
8I9T|1|C1|A|1226
8I9T|1|C1|A|1227
8I9T|1|C1|G|1228
8I9T|1|C1|U|1229
8I9T|1|C1|C|1230
8I9T|1|C1|G|1231

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain Cb

ATP-dependent RNA helicase DBP10

Chain LK

60S ribosomal protein L12-like protein