HL_8I9T_032

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAUGU

Length

5 nucleotides

Bulged bases

8I9T|1|C1|G|2484

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_032 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1905

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8I9T|1|C1|A|2481
8I9T|1|C1|A|2482
8I9T|1|C1|U|2483
8I9T|1|C1|G|2484
8I9T|1|C1|U|2546

Current chains

Chain C1

RNA (3341-MER)

Nearby chains