HL_8I9T_036

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUUGUUCACC

Length

11 nucleotides

Bulged bases

8I9T|1|C1|U|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_036 not in the Motif Atlas

Geometric match to HL_4UYK_001

Geometric discrepancy: 0.3354

The information below is about HL_4UYK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14063.2

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8I9T|1|C1|G|2876
8I9T|1|C1|A|2877
8I9T|1|C1|U|2878
8I9T|1|C1|U|2879
8I9T|1|C1|G|2880
8I9T|1|C1|U|2881
8I9T|1|C1|U|2882
8I9T|1|C1|C|2883
8I9T|1|C1|A|2884
8I9T|1|C1|C|2885
8I9T|1|C1|C|2886

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain Cb

ATP-dependent RNA helicase DBP10