HL_8I9T_039

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_039 not in the Motif Atlas

Homologous match to HL_5TBW_066

Geometric discrepancy: 0.2914

The information below is about HL_5TBW_066

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8I9T|1|C1|C|3025
8I9T|1|C1|G|3026
8I9T|1|C1|A|3027
8I9T|1|C1|C|3028
8I9T|1|C1|C|3029
8I9T|1|C1|G|3030

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain Cg

Brix domain-containing protein