HL_8I9V_004

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8I9V|1|C1|U|131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9V_004 not in the Motif Atlas

Geometric match to HL_7A0S_019

Geometric discrepancy: 0.2669

The information below is about HL_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8I9V|1|C1|C|129
8I9V|1|C1|U|130
8I9V|1|C1|U|131
8I9V|1|C1|C|132
8I9V|1|C1|G|133
8I9V|1|C1|G|134

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain CJ

Pescadillo homolog

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase