HL_8I9V_035

3D structure

PDB id

8I9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8I9V|1|C1|U|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9V_035 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.2483

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8I9V|1|C1|C|2798
8I9V|1|C1|G|2799
8I9V|1|C1|U|2800
8I9V|1|C1|U|2801
8I9V|1|C1|C|2802
8I9V|1|C1|A|2803
8I9V|1|C1|U|2804
8I9V|1|C1|A|2805
8I9V|1|C1|G|2806

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CL

Putative GTP binding protein

Chain LS

60S ribosomal protein L20