HL_8I9V_037
3D structure
- PDB id
- 8I9V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUGUUCACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9V_037 not in the Motif Atlas
- Geometric match to HL_4UYK_001
- Geometric discrepancy: 0.349
- The information below is about HL_4UYK_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8I9V|1|C1|G|2876
8I9V|1|C1|A|2877
8I9V|1|C1|U|2878
8I9V|1|C1|U|2879
8I9V|1|C1|G|2880
8I9V|1|C1|U|2881
8I9V|1|C1|U|2882
8I9V|1|C1|C|2883
8I9V|1|C1|A|2884
8I9V|1|C1|C|2885
8I9V|1|C1|C|2886
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain Cb
- ATP-dependent RNA helicase DBP10
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