HL_8I9V_046
3D structure
- PDB id
- 8I9V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9V_046 not in the Motif Atlas
- Geometric match to HL_6JXM_002
- Geometric discrepancy: 0.2237
- The information below is about HL_6JXM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_97725.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8I9V|1|C2|C|47
8I9V|1|C2|A|48
8I9V|1|C2|G|49
8I9V|1|C2|C|50
8I9V|1|C2|G|51
8I9V|1|C2|A|52
8I9V|1|C2|A|53
8I9V|1|C2|A|54
8I9V|1|C2|U|55
8I9V|1|C2|G|56
Current chains
- Chain C2
- RNA (256-MER)
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain CR
- Nucleolar protein 16
- Chain Cd
- Brix domain-containing protein
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
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