HL_8I9W_022

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAACUG

Length

8 nucleotides

Bulged bases

8I9W|1|C1|C|1063

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9W_022 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.182

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8I9W|1|C1|C|1058
8I9W|1|C1|U|1059
8I9W|1|C1|U|1060
8I9W|1|C1|A|1061
8I9W|1|C1|A|1062
8I9W|1|C1|C|1063
8I9W|1|C1|U|1064
8I9W|1|C1|G|1065

Current chains

Chain C1

RNA (3341-MER)

Nearby chains