HL_8I9X_009
3D structure
- PDB id
- 8I9X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUAAAUUUC
- Length
- 10 nucleotides
- Bulged bases
- 8I9X|1|C1|U|303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9X_009 not in the Motif Atlas
- Geometric match to HL_2ZZN_004
- Geometric discrepancy: 0.1838
- The information below is about HL_2ZZN_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_57684.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8I9X|1|C1|G|295
8I9X|1|C1|G|296
8I9X|1|C1|U|297
8I9X|1|C1|A|298
8I9X|1|C1|A|299
8I9X|1|C1|A|300
8I9X|1|C1|U|301
8I9X|1|C1|U|302
8I9X|1|C1|U|303
8I9X|1|C1|C|304
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CA
- Brix domain-containing protein
- Chain CE
- RNA helicase
- Chain CU
- rRNA-processing protein EBP2
- Chain LN
- Ribosomal protein L15
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