HL_8I9X_063

3D structure

PDB id

8I9X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUGG

Length

5 nucleotides

Bulged bases

8I9X|1|C2|C|172, 8I9X|1|C2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9X_063 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.3826

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8I9X|1|C2|C|171
8I9X|1|C2|C|172
8I9X|1|C2|U|173
8I9X|1|C2|G|174
8I9X|1|C2|G|175

Current chains

Chain C2

RNA (319-MER)

Nearby chains

Chain CB

Ribosome biogenesis protein C8F11.04